PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010073
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family YABBY
Protein Properties Length: 169aa    MW: 19077.1 Da    PI: 8.2147
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010073genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY179.52e-5531622167
      YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasql.laaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
                ++f+ +e++CyvqC+ C+til+vsvP  sl++ vtv CGhC+sllsvn++ka+ + l   s    sl  ++ +      e+++++++ + s s ++++ k
  Cla010073   3 HLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVpLHFLS----SLSRNVPK------EACREMNSGKFSDSFKRPNLK 92 
                78999*******************************************9987643122222....33333333......333333333444444444444 PP

      YABBY 101 lsenedee..vprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167
                +se e ee  +p +pp v++PPekrqr+Psayn+fik+ei+r+ka+nP+++h+eaf +aaknWa fP+i 
  Cla010073  93 FSEYEVEEglIPATPPfVNKPPEKRQRAPSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQ 162
                44433333227777777**************************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.6E-578162IPR006780YABBY protein
SuperFamilySSF470958.51E-10104160IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.2E-6112160IPR009071High mobility group box domain
PROSITE profilePS501188.709117169IPR009071High mobility group box domain
CDDcd000842.02E-4119165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MNHLFELPEK ICYVQCGICT TILLVSVPCG SLSMAVTVTC GHCSSLLSVN MMKATLVPLH  60
FLSSLSRNVP KEACREMNSG KFSDSFKRPN LKFSEYEVEE GLIPATPPFV NKPPEKRQRA  120
PSAYNCFIKD EIRRLKAHNP EMTHKEAFRT AAKNWANFPP IQEKEDTEN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818962e-45LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132642e-45LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446193.11e-111PREDICTED: axial regulator YABBY 4
SwissprotQ9LDT34e-57YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A0A0KTN41e-111A0A0A0KTN4_CUCSA; Uncharacterized protein
STRINGVIT_01s0127g00330.t018e-71(Vitis vinifera)
STRINGGLYMA01G03580.24e-70(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61442852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.12e-58YABBY family protein